PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g09680.1
Common NameLR48_Vigan10g139000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 916aa    MW: 102768 Da    PI: 4.7864
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g09680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-10749348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
   Vang02g09680.1  7 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 49
                     6*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.578153IPR017930Myb domain
SMARTSM007179.0E-11451IPR001005SANT/Myb domain
CDDcd116593.12E-27652No hitNo description
Gene3DG3DSA:1.10.10.601.8E-10750IPR009057Homeodomain-like
SuperFamilySSF466895.01E-11754IPR009057Homeodomain-like
PfamPF139215.1E-9855No hitNo description
PfamPF118312.0E-61352600IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MQSSLTEWTR EEDEKLLHLA KLMPTQWRTI APIVGRTPSQ CLERYEKLLD AACXKDENYE  60
PGDDPRKLRP GEIDPNXESK PARPDPVDMD EDEKEMLSEA RARLANTKGK KAKRKAREKQ  120
LEEARRLASL QKKRELKAAG IDIRQRKRKR KGIDYNAEIP FEKRPPPGFF DVADEDRPVE  180
QPKFPTTIEE LEGKRRVDIE AQLRKQDIAK NKIAQRQDAP SAILHANKLN DPETVRKRSK  240
LMLPPPQISD QELDEIAKLG YASDLAGSQE LTEGSGATXA LLANYAQTPG QGVTPLRTPQ  300
RTPSGKGDAI MMEXENLARL RESQTPLLGG ENPELHPSDF SGVTPKKKDI QTPNPMLTPS  360
ATPGGAGLTP RIGMTPTRDG FSFSMTPKGT PLRDELRINE DMNMHESTKR ELQRQADMRR  420
SLRSGLGSLP QPKNEYQIVM EPVTEDAEEP EEKIEEDMSD RIAREKAEEE ARQQALLRKR  480
SKVLQRELPR PPAASLELIR NSLIRSDGDK SSFVPPTSIE QADEMIRKEL LTLLEHDNAK  540
YPLDDKVNKE KKKGVKRSAD LSAVPVIEDF EEDEMKDADK LIKEEVQYLC AAMGHENEPL  600
EEFIEAHXTC LNDLMYFPTR NAYGLXSVAG NMEKLAALQN EFENVRKKLD DDKEKMVRLE  660
KKVTVITQGY EMRAKKSIWP QIEATFKHMD IAATELECFK ALQNQEQLAA SHRINNLWSE  720
VQKQKELEKT LQNRYGSLIE ELEKMQNIIN QCRLKAEQQK EIEANNAHAE TNETKVNDTD  780
VQDTGSIVPH SAEDGNAQAI TVESSHDGTS DQQVGIMQDQ STSSPSHDMN VDSDNMHTIH  840
DSDAKLANAS PAAENVVEIV EGSSPTDGYT ENGENVSEMG ASMEINSPNQ DVVANAVTTG  900
ESSMEETNAV TEEAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jb9_W2e-63617059236Pre-mRNA-splicing factor cdc5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131150KKRELKAAGIDIRQRKRKRK
2145150RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493915.10.0PREDICTED: cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0L9VKK70.0A0A0L9VKK7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TAA30.0A0A0S3TAA3_PHAAN; Uncharacterized protein
STRINGGLYMA20G36600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]